Implementation
==============


.. _Logo_class:

Logo class
----------

.. autoclass:: logomaker.Logo
    :members:


.. _Glyph_class:

Glyph class
-----------

.. autoclass:: logomaker.Glyph
    :members:


.. _matrix_functions:

matrix functions
----------------

.. _transform_matrix:

.. autofunction:: logomaker.transform_matrix

.. _sequence_to_matrix:

.. autofunction:: logomaker.sequence_to_matrix

.. _alignment_to_matrix:

.. autofunction:: logomaker.alignment_to_matrix

.. _saliency_to_matrix:

.. autofunction:: logomaker.saliency_to_matrix

.. _validate_matrix:

.. autofunction:: logomaker.validate_matrix



.. _dataset_functions:

dataset functions
-----------------

.. _demo:

.. autofunction:: logomaker.demo

.. _list_example_matrices:

.. autofunction:: logomaker.list_example_matrices

.. _get_example_matrix:

.. autofunction:: logomaker.get_example_matrix

.. _list_example_datafiles:

.. autofunction:: logomaker.list_example_datafiles

.. _open_example_datafile:

.. autofunction:: logomaker.open_example_datafile

functional tests
----------------

.. _tests:

.. autofunction:: logomaker.run_tests