Logo
  • Examples
    • CRP energy logo
    • Splice site probability logo
    • WW domain information logo
    • ARS enrichment logo
    • Neural network saliency logo
    • Logomaker logo
    • Color schemes
    • References
  • Implementation
    • Logo class
      • Logo
    • Glyph class
      • Glyph
    • matrix functions
      • transform_matrix()
      • sequence_to_matrix()
      • alignment_to_matrix()
      • saliency_to_matrix()
      • validate_matrix()
    • dataset functions
      • demo()
      • list_example_matrices()
      • get_example_matrix()
      • list_example_datafiles()
      • open_example_datafile()
    • functional tests
      • run_tests()
logomaker
  • Index

Index

_ | A | D | F | G | H | L | O | R | S | T | V

_

  • __init__() (logomaker.Glyph method)
    • (logomaker.Logo method)

A

  • alignment_to_matrix() (in module logomaker)

D

  • demo() (in module logomaker)
  • draw() (logomaker.Glyph method)
    • (logomaker.Logo method)
  • draw_baseline() (logomaker.Logo method)

F

  • fade_glyphs_in_probability_logo() (logomaker.Logo method)

G

  • get_example_matrix() (in module logomaker)
  • Glyph (class in logomaker)

H

  • highlight_position() (logomaker.Logo method)
  • highlight_position_range() (logomaker.Logo method)

L

  • list_example_datafiles() (in module logomaker)
  • list_example_matrices() (in module logomaker)
  • Logo (class in logomaker)

O

  • open_example_datafile() (in module logomaker)

R

  • run_tests() (in module logomaker)

S

  • saliency_to_matrix() (in module logomaker)
  • sequence_to_matrix() (in module logomaker)
  • set_attributes() (logomaker.Glyph method)
  • style_glyphs() (logomaker.Logo method)
  • style_glyphs_below() (logomaker.Logo method)
  • style_glyphs_in_sequence() (logomaker.Logo method)
  • style_single_glyph() (logomaker.Logo method)
  • style_spines() (logomaker.Logo method)
  • style_xticks() (logomaker.Logo method)

T

  • transform_matrix() (in module logomaker)

V

  • validate_matrix() (in module logomaker)

© Copyright 2019, Ammar Tareen and Justin B. Kinney. Last updated on March 17, 2025.

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